Package: MAGNAMWAR 2.0.4

MAGNAMWAR: A Pipeline for Meta-Genome Wide Association

Correlates variation within the meta-genome to target species phenotype variations in meta-genome with association studies. Follows the pipeline described in Chaston, J.M. et al. (2014) <doi:10.1128/mBio.01631-14>.

Authors:Corinne Sexton [aut], John Chaston [aut, cre], Hayden Smith [ctb]

MAGNAMWAR_2.0.4.tar.gz
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MAGNAMWAR_2.0.4.tgz(r-4.4-any)MAGNAMWAR_2.0.4.tgz(r-4.3-any)
MAGNAMWAR_2.0.4.tar.gz(r-4.5-noble)MAGNAMWAR_2.0.4.tar.gz(r-4.4-noble)
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MAGNAMWAR.pdf |MAGNAMWAR.html✨
MAGNAMWAR/json (API)
NEWS

# Install 'MAGNAMWAR' in R:
install.packages('MAGNAMWAR', repos = c('https://johnchaston.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/johnchaston/magnamwar/issues

Datasets:

On CRAN:

14 exports 0.93 score 49 dependencies 1 mentions 16 scripts 187 downloads

Last updated 6 years agofrom:185046515c. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 06 2024
R-4.5-winOKSep 06 2024
R-4.5-linuxOKSep 06 2024
R-4.4-winOKSep 06 2024
R-4.4-macOKSep 06 2024
R-4.3-winOKSep 06 2024
R-4.3-macOKSep 06 2024

Exports:AnalyzeOrthoMCLCalculatePrincipalCoordinatesFormatAfterOrthoFormatMCLFastasJoinRepSeqManhatGrpPDGPlotPDGvOGPhyDataErrorPrintOGSeqsQQPlotterRASTtoGBKSurvAppendMatrixWriteMCL

Dependencies:ade4apebdsmatrixbootcalibrateclicodetoolscoxmedigestdoParalleldplyrfansiforeachgenericsglueiteratorslatticelifecyclelme4magrittrMASSMatrixminqamultcompmvtnormnlmenloptrpillarpixmappkgconfigplyrqqmanR6RcppRcppArmadilloRcppEigenrlangsandwichsegmentedseqinrspsurvivalTH.datatibbletidyselectutf8vctrswithrzoo

Using MAGNAMWAR: a case study with Drosophila melanogaster

Corinne Sexton

Rendered fromusing_mag.Rmdusingknitr::rmarkdownon Sep 06 2024.

Last update: 2017-12-13
Started: 2016-07-26