Package: MAGNAMWAR 2.0.4

MAGNAMWAR: A Pipeline for Meta-Genome Wide Association

Correlates variation within the meta-genome to target species phenotype variations in meta-genome with association studies. Follows the pipeline described in Chaston, J.M. et al. (2014) <doi:10.1128/mBio.01631-14>.

Authors:Corinne Sexton [aut], John Chaston [aut, cre], Hayden Smith [ctb]

MAGNAMWAR_2.0.4.tar.gz
MAGNAMWAR_2.0.4.zip(r-4.7)MAGNAMWAR_2.0.4.zip(r-4.6)MAGNAMWAR_2.0.4.zip(r-4.5)
MAGNAMWAR_2.0.4.tgz(r-4.6-any)MAGNAMWAR_2.0.4.tgz(r-4.5-any)
MAGNAMWAR_2.0.4.tar.gz(r-4.7-any)MAGNAMWAR_2.0.4.tar.gz(r-4.6-any)
MAGNAMWAR_2.0.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
MAGNAMWAR/json (API)
NEWS

# Install 'MAGNAMWAR' in R:
install.packages('MAGNAMWAR', repos = c('https://johnchaston.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/johnchaston/magnamwar/issues

Datasets:

On CRAN:

Conda:

3.90 score 16 scripts 169 downloads 1 mentions 14 exports 51 dependencies

Last updated from:185046515c. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK165
source / vignettesOK230
linux-release-x86_64OK159
macos-release-arm64OK178
macos-oldrel-arm64OK170
windows-develOK111
windows-releaseOK122
windows-oldrelOK137
wasm-releaseOK116

Exports:AnalyzeOrthoMCLCalculatePrincipalCoordinatesFormatAfterOrthoFormatMCLFastasJoinRepSeqManhatGrpPDGPlotPDGvOGPhyDataErrorPrintOGSeqsQQPlotterRASTtoGBKSurvAppendMatrixWriteMCL

Dependencies:ade4apebdsmatrixbootcalibrateclicodetoolscoxmedigestdoParalleldplyrforeachgenericsglueiteratorslatticelifecyclelme4magrittrMASSMatrixminqamultcompmvtnormnlmenloptrpillarpixmappkgconfigplyrqqmanR6rbibutilsRcppRcppArmadilloRcppEigenRdpackreformulasrlangsandwichsegmentedseqinrspsurvivalTH.datatibbletidyselectutf8vctrswithrzoo

Using MAGNAMWAR: a case study with Drosophila melanogaster

Corinne Sexton

Rendered fromusing_mag.Rmdusingknitr::rmarkdownon Jun 03 2026.

Last update: 2017-12-13
Started: 2016-07-26